Origin, evolution and dynamic context of a Neoglacial lateral-frontal moraine at Austre Lovénbreen, Svalbard

Moraines marking the Neoglacial limits in Svalbard are commonly ice cored. Investigating the nature of this relict ice is important because it can aid our understanding of former glacier dynamics. This paper examines the composition of the lateral–frontal moraine associated with the Neoglacial limit at Austre Lovénbreen and assesses the likely geomorphological evolution. The moraine was investigated using ground-penetrating radar (GPR), with context being provided by structural mapping of the glacier based on an oblique aerial image from 1936 and vertical aerial imagery from 2003. Multiple up-glacier dipping reflectors and syncline structures are found in the GPR surveys. The reflectors are most clearly defined in lateral positions, where the moraine is substantially composed of ice. The frontal area of the moraine is dominantly composed of debris. The core of the lateral part of the moraine is likely to consist of stacked sequences of basal ice that have been deformed by strong longitudinal compression. The long term preservation potential of the ice-dominated lateral moraine is negligible, whereas the preservation of the debris-dominated frontal moraine is high. A glacier surface bulge, identified on the 1936 aerial imagery, provides evidence that Austre Lovénbreen has previously displayed surge activity, although it is highly unlikely to do so in the near future in its current state. This research shows the value of relict buried ice that is preserved in landforms to aiding our understanding of former glacier characteristics

Characteristics of lateral-frontal moraine formed at Arctic and Alpine glaciers

Recent climatic amelioration during the 20th and 21st centuries has stimulated the recession of glaciers world-wide. Moraines developed by valley glaciers provide a sedimentary record of their past response to climatic forcing. Despite the use of moraines for understanding the character and behaviour of former glaciers, our understanding of moraine development is lacking largely due to limited opportunities to study active moraine formation. This thesis reports on internal structure and sedimentary composition of lateral-frontal moraine at two Arctic (Austre Lovénbreen, Svalbard and Isfallsglaciären, Sweden) glaciers and one Alpine (Schwarzberggletscher, Switzerland) glacier and aids understanding of their palaeo-environmental significance. The internal structure and sedimentary architecture of Arctic lateral-frontal moraine is documented using ground penetrating radar (GPR) and via shallow excavation. Lateral-frontal moraine at both Arctic sites are shown to contain buried ice within their lateral zones, but not within their frontal zones, although the volumetric content of the buried ice and potential origin varies between sites. Frontal zones are therefore likely to be better preserved in the geomorphological record following complete de-icing, whereas lateral zones, which may also be subject to de-icing and external censoring from slope processes, may be poorly preserved. As the internal structure is dissimilar across Arctic sites, it is argued that the processes involved in the development of landforms by Arctic polythermal glaciers vary between high-Arctic and continental Scandinavian settings. Arctic lateral-frontal moraine are also distinct from those found at Alpine sites which are organised into stacked diamicton units that dip away from the lateral margin of the glacier. The sedimentary signature of Arctic and Alpine lateral-frontal moraine are investigated and compared. All moraines investigated exhibit clast-form gradients which is interpreted to relate to the relative significance and spatial variation of ‘active’ and ‘passive’ debris transport mechanisms within Arctic and Alpine valley glacier landsystems. However, the climatic, glaciological, and topographic regimes in which the moraines form influence the resulting character of the landform. The evolution of a degrading ice-cored moraine at Austre Lovénbreen is investigated using repeat photogrammetric topographic surveys. Relict glacier ice is undergoing moderate rates of degradation, predominately via down-wastage and could potentially be preserved as an archive of former high-Arctic glacier characteristics. This thesis also contributes to the wider body of knowledge in relation to the use of unmanned aerial vehicles (UAVs) and ‘Structure-from-Motion’ (SfM) photogrammetry for geomorphological research. The multi-technique approach employed by this research has allowed for the glaciological significance of subsets of lateral-frontal moraine (‘Controlled’, ‘Østrem’ and ‘Alpine’ type) within in glaciated valley landsystem to be better understood. Conceptual models accounting for landform development are presented and aid Quaternary studies that seek to identify and use lateral-frontal moraine for dating past glacier activity and determining palaeo-glacier characteristics

Evolution of high-Arctic glacial landforms during deglaciation

Glacial landsystems in the high-Arctic have been reported to undergo geomorphological transformation during deglaciation. This research evaluates moraine evolution over a decadal timescale at Midtre Lovénbreen, Svalbard. This work is of interest because glacial landforms developed in Svalbard have been used as an analogue for landforms developed during Pleistocene mid-latitude glaciation. Ground penetrating radar was used to investigate the subsurface characteristics of moraines. To determine surface change, a LiDAR topographic data set (obtained 2003) and a UAV-derived (obtained 2014) digital surface model processed using structure-from-motion (SfM) are also compared. Evaluation of these data sets together enables subsurface character and landform response to climatic amelioration to be linked. Ground penetrating radar evidence shows that the moraine substrate at Midtre Lovénbreen includes ice-rich (radar velocities of 0.17 m ns−1) and debris-rich (radar velocities of 0.1–0.13 m ns−1) zones. The ice-rich zones are demonstrated to exhibit relatively high rates of surface change (mean thresholded rate of −4.39 m over the 11-year observation period). However, the debris-rich zones show a relatively low rate of surface change (mean thresholded rate of −0.98 m over the 11-year observation period), and the morphology of the debris-rich landforms appear stable over the observation period. A complex response of proglacial landforms to climatic warming is shown to occur within and between glacier forelands as indicated by spatially variable surface lowering rates. Landform response is controlled by the ice-debris balance of the moraine substrate, along with the topographic context (such as the influence of meltwater). Site-specific characteristics such as surface debris thickness and glaciofluvial drainage are, therefore, argued to be a highly important control on surface evolution in ice-cored terrain, resulting in a diverse response of high-Arctic glacial landsystems to climatic amelioration. These results highlight that care is needed when assessing the long-term preservation potential of contemporary landforms at high-Arctic glaciers. A better understanding of ice-cored terrain facilitates the development of appropriate age and climatic interpretations that can be obtained from palaeo ice-marginal landsystems

Analysis of 'hummocky moraine' using Structure-from-Motion photogrammetry

This study presents results of a high-resolution topographic survey of the proglacial area of Austre Lovénbreen, Svalbard. Structure-from-Motion (SfM) was used to generate a digital elevation model (DEM) of the proglacial zone from aerial imagery. This DEM is used to explore the topography of a zone of hummocky moraine within the glacier’s Neoglacial limit. The origin of hummocky moraine has proven controversial, but detailed morphological studies can contribute to a better understanding of how these features form, and the extent to which they may be preserved in the palaeo-glaciological record, including within northwest Britain. In cross-profile, hummocky moraine is characterised by a sequence of asymmetrical ridges, with longer, low angle up-glacier faces, and shorter, steeper down-glacier faces. This profile is interpreted to represent a sequence of ridges stacked-up against a bedrock riegel and reverse bedslope. Whilst the origin of these features is uncertain, the enhanced compression associated with glacier flow against a bedrock riegel, possibly during a glacier surge, may have been sufficient to have generated debris-rich englacial thrusts that subsequently melted-out to form the observed hummocky moraine. The significance of this research highlights ongoing studies aimed at understanding the origin and palaeo-glaciological significance of hummocky moraine in northwest Britain

Expression of a malarial Hsp70 improves defects in chaperone-dependent activities in ssa1 mutant yeast

Plasmodium falciparum causes the most virulent form of malaria and encodes a large number of molecular chaperones. Because the parasite encounters radically different environments during its lifecycle, many members of this chaperone ensemble may be essential for P. falciparum survival. Therefore, Plasmodium chaperones represent novel therapeutic targets, but to establish the mechanism of action of any developed therapeutics, it is critical to ascertain the functions of these chaperones. To this end, we report the development of a yeast expression system for PfHsp70-1, a P. falciparum cytoplasmic chaperone. We found that PfHsp70-1 repairs mutant growth phenotypes in yeast strains lacking the two primary cytosolic Hsp70s, SSA1 and SSA2, and in strains harboring a temperature sensitive SSA1 allele. PfHsp70-1 also supported chaperone-dependent processes such as protein translocation and ER associated degradation, and ameliorated the toxic effects of oxidative stress. By introducing engineered forms of PfHsp70-1 into the mutant strains, we discovered that rescue requires PfHsp70-1 ATPase activity. Together, we conclude that yeast can be co-opted to rapidly uncover specific cellular activities mediated by malarial chaperones. © 2011 Bell et al

Expression of P. falciparum var Genes Involves Exchange of the Histone Variant H2A.Z at the Promoter

Plasmodium falciparum employs antigenic variation to evade the human immune response by switching the expression of different variant surface antigens encoded by the var gene family. Epigenetic mechanisms including histone modifications and sub-nuclear compartmentalization contribute to transcriptional regulation in the malaria parasite, in particular to control antigenic variation. Another mechanism of epigenetic control is the exchange of canonical histones with alternative variants to generate functionally specialized chromatin domains. Here we demonstrate that the alternative histone PfH2A.Z is associated with the epigenetic regulation of var genes. In many eukaryotic organisms the histone variant H2A.Z mediates an open chromatin structure at promoters and facilitates diverse levels of regulation, including transcriptional activation. Throughout the asexual, intraerythrocytic lifecycle of P. falciparum we found that the P. falciparum ortholog of H2A.Z (PfH2A.Z) colocalizes with histone modifications that are characteristic of transcriptionally-permissive euchromatin, but not with markers of heterochromatin. Consistent with this finding, antibodies to PfH2A.Z co-precipitate the permissive modification H3K4me3. By chromatin-immunoprecipitation we show that PfH2A.Z is enriched in nucleosomes around the transcription start site (TSS) in both transcriptionally active and silent stage-specific genes. In var genes, however, PfH2A.Z is enriched at the TSS only during active transcription in ring stage parasites. Thus, in contrast to other genes, temporal var gene regulation involves histone variant exchange at promoter nucleosomes. Sir2 histone deacetylases are important for var gene silencing and their yeast ortholog antagonises H2A.Z function in subtelomeric yeast genes. In immature P. falciparum parasites lacking Sir2A or Sir2B high var transcription levels correlate with enrichment of PfH2A.Z at the TSS. As Sir2A knock out parasites mature the var genes are silenced, but PfH2A.Z remains enriched at the TSS of var genes; in contrast, PfH2A.Z is lost from the TSS of de-repressed var genes in mature Sir2B knock out parasites. This result indicates that PfH2A.Z occupancy at the active var promoter is antagonized by PfSir2A during the intraerythrocytic life cycle. We conclude that PfH2A.Z contributes to the nucleosome architecture at promoters and is regulated dynamically in active var genes

H2A.Z Demarcates Intergenic Regions of the Plasmodium falciparum Epigenome That Are Dynamically Marked by H3K9ac and H3K4me3

Epigenetic regulatory mechanisms and their enzymes are promising targets for malaria therapeutic intervention; however, the epigenetic component of gene expression in P. falciparum is poorly understood. Dynamic or stable association of epigenetic marks with genomic features provides important clues about their function and helps to understand how histone variants/modifications are used for indexing the Plasmodium epigenome. We describe a novel, linear amplification method for next-generation sequencing (NGS) that allows unbiased analysis of the extremely AT-rich Plasmodium genome. We used this method for high resolution, genome-wide analysis of a histone H2A variant, H2A.Z and two histone H3 marks throughout parasite intraerythrocytic development. Unlike in other organisms, H2A.Z is a constant, ubiquitous feature of euchromatic intergenic regions throughout the intraerythrocytic cycle. The almost perfect colocalisation of H2A.Z with H3K9ac and H3K4me3 suggests that these marks are preferentially deposited on H2A.Z-containing nucleosomes. By performing RNA-seq on 8 time-points, we show that acetylation of H3K9 at promoter regions correlates very well with the transcriptional status whereas H3K4me3 appears to have stage-specific regulation, being low at early stages, peaking at trophozoite stage, but does not closely follow changes in gene expression. Our improved NGS library preparation procedure provides a foundation to exploit the malaria epigenome in detail. Furthermore, our findings place H2A.Z at the cradle of P. falciparum epigenetic regulation by stably defining intergenic regions and providing a platform for dynamic assembly of epigenetic and other transcription related complexes

Monitoring soil surface roughness under growing winter wheat with low‐altitude UAV sensing: Potential and limitations

Soil surface roughness (SSR) is an important factor in controlling sediment and runoff generation, influencing directly a wide spectrum of erosion parameters. SSR is highly variable in time and space under natural conditions, and characterizing SSR to improve the parameterization of hydrological and erosion models has proved challenging. Our study uses recent technological and algorithmic developments in capturing and processing close aerial sensing data to evaluate how high-resolution imagery can assist the temporally and spatially explicit monitoring of SSR. We evaluated the evolution of SSR under natural rainfall and growing vegetation conditions on two arable fields in Denmark. Unmanned aerial vehicle (UAV) photogrammetry was used to monitor small field plots over 7 months after seeding of winter wheat following conventional and reduced tillage treatments. Field campaigns were conducted at least once a month from October until April, resulting in nine time steps of data acquisition. Structure from motion photogrammetry was used to derive high-resolution point clouds with an average ground sampling distance of 2.7 mm and a mean ground control point accuracy of 1.8 mm. A comprehensive workflow was developed to process the point clouds, including the detection of vegetation and the removal of vegetation-induced point cloud noise. Rasterized and filtered point clouds were then used to determine SSR geostatistically as the standard deviation of height, applying different kernel sizes and using semivariograms. The results showed an influence of kernel size on roughness, with a value range of 0.2–1 cm of average height deviation during the monitoring period. Semivariograms showed a measurable decrease in sill variance and an increase in range over time. This research demonstrated multiple challenges to measuring SSR with UAV under natural conditions with increasing vegetation cover. The proposed workflow represents a step forward in tackling those challenges and provides a knowledge base for future research. © 2020 John Wiley & Sons, Ltd. © 2020 John Wiley & Sons, Ltd